Selected Publications
2025
P. Sadiku*, A.J. Brenes* ... "Single cell proteomic analysis defines discrete neutrophil functional states in human glioblastoma", bioRxiv (2025)
2024
A.J. Brenes "Calculating and Reporting Coefficients of Variation for DIA-Based Proteomics", Journal of Proteome Research (2024)
C. Baker ... & A.J. Brenes "Optimizing Spectronaut Search Parameters to Improve Data Quality with Minimal Proteome Coverage Reductions in DIA Analyses of Heterogeneous Samples", Journal of Proteome Research (2024)
M.B. Long ... & , A.J. Brenes. "Extensive acute and sustained changes to neutrophil proteomes post-SARS-CoV-2 infection", European Respiratory Journal (2024)
2023
A.J. Brenes et al. "The Immunological Proteome Resource", Nature Immunology (2023)
2021
A. Brenes & M. Vandereyken. "Tissue environment, not ontogeny, defines murine intestinal intraepithelial T lymphocytes", Molecular and Cellular Proteomics (2019)
2019
A. Brenes et al. "Multibatch TMT reveals false positives, batch effects and missing values", Molecular and Cellular Proteomics (2019)